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Updated November 2019

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Nomenclature

Short Name:
MRCKb
Full Name:
Myotonic dystrophy kinase-related CDC42-binding kinase beta
Alias:
  • CDC42BPB
  • CDC42 binding protein kinase beta
  • KIAA1124
  • MRCK beta
  • CDC42-binding protein kinase beta
  • DMPK-like
  • DMPK-like beta
  • EC 2.7.11.1

Classification

Type:
Protein-serine/threonine kinase
Group:
AGC
Family:
DMPK
SubFamily:
GEK
 
 

Specific Links

Entrez-Gene Entry: 9578
Entrez-Protein Entry: NP_006026
KinBASE Entry: MRCKB
Pfam Entry: Q9Y5S2
PhosphoNET Entry: Q9Y5S2
Phosphosite Plus Entry: 675
UCSD-Nature Entry: A003628
UniProt Entry: Q9Y5S2
Kinexus Products: MRCKb
Myotonic dystrophy kinase-related CDC42-binding kinase beta (C408-D427, human) peptide - Powder PE-01BEE65

General Links

ClustalW2
GPS-Cuckoo
Human Protein Atlas
Kinase.com
Kinase Research
Kinasource
Kinomer
Netphorest
NetworKIN
Phosida
PhosphoElm
Protein Blast
ScanSite
String

Structure

Mol. Mass (Da):
194315
# Amino Acids:
1711
# mRNA Isoforms:
1
mRNA Isoforms:
194,315 Da (1711 AA; Q9Y5S2)
4D Structure:
Homodimer and homotetramer via the coiled coil regions. Interacts tightly with GTP-bound but not GDP-bound CDC42
1D Structure:
Retrieve Gene Sequence
Retrieve Full Protein Sequence
Retrieve Catalytic Domain Sequence
 
3D Image (rendered using PV Viewer):

PDB ID
4UAK

Subfamily Alignment
subfamily domain
 
Domain Distribution:
Start End Domain
76 342 Pkinase
343 413 Pkinase_C
431 665 Coiled-coil
726 817 Coiled-coil
877 939 Coiled-coil
1026 1075 C1
1095 1214 PH
1240 1513 CNH
1583 1618 PBD
1583 1596 CRIB
878 939 DMPK
 

Kinexus Products

Click on entries below for direct links to relevant products from Kinexus for this protein kinase.
hiddentext
○ Myotonic dystrophy kinase-related CDC42-binding kinase beta (C408-D427, human) peptide - Powder PE-01BEE65
 

Post-translation Modifications

For detailed information on phosphorylation of this kinase go to PhosphoNET
Acetylated:
K489.
Methylated:
R671.
Serine phosphorylated:

S304, S310, S363, S417, S421, S475, S481, S524, S641, S659, S707, S840, S851, S914, S1190, S1191, S1640, S1643, S1644, S1647, S1650, S1659, S1677, S1680, S1682, S1683, S1686, S1690, S1693.
Threonine phosphorylated:

T307, T423, T467, T676, T757, T843, T1196, T1652, T1678.
Tyrosine phosphorylated:

Y954, Y1118, Y1355, Y1638.
Ubiquitinated:
K314, K337, K426, K665, K864.
 

Distribution

Based on gene microarray analysis from the NCBI
Human Tissue Distribution
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
  • adipose
    88

    1211

    22

    1386

  • adrenal
    21

    288

    9

    295

  • bladder
    49

    677

    37

    915

  • brain
    34

    462

    105

    465

  • breast
    59

    810

    21

    691

  • cervix
    9

    119

    53

    235

  • colon
    6

    86

    25

    139

  • heart
    45

    611

    57

    723

  • intestine
    54

    733

    10

    445

  • kidney
    14

    189

    35

    132

  • liver
    18

    242

    50

    207

  • lung
    62

    855

    107

    619

  • lymphnode
    20

    275

    48

    242

  • ovary
    20

    279

    6

    245

  • pancreas
    26

    356

    47

    344

  • pituitary
    15

    205

    12

    198

  • prostate
    26

    361

    116

    281

  • salivarygland
    23

    318

    42

    314

  • skeletalmuscle"
    19

    260

    73

    395

  • skin
    45

    622

    79

    520

  • spinalcord
    42

    577

    46

    366

  • spleen
    22

    295

    48

    210

  • stomach
    37

    512

    38

    355

  • testis
    26

    359

    42

    246

  • thymus
    13

    183

    46

    259

  • thyroid
    39

    533

    78

    500

  • tonsil
    23

    321

    51

    444

  • trachea
    24

    329

    42

    270

  • uterus
    35

    484

    42

    327

  • reticulocytes"
    1.5

    20

    14

    19

  • t-lymphocytes
    48

    663

    18

    475

  • b-lymphocytes
    100

    1370

    32

    3012

  • neutrophils
    35

    478

    63

    782

  • macrophages
    70

    955

    52

    788

  • sperm
    4

    56

    35

    43

 

Evolution

Species Conservation
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
  • tableheader
    100

    100

    100
  • tableheader
    94.9

    95.7

    100
  • tableheader
    94.9

    95.7

    98
  • tableheader
    -

    -

    91
  • tableheader
    -

    -

    93
  • tableheader
    60

    76.3

    93
  • tableheader
    90

    94

    -
  • tableheader
    -

    -

    92
  • tableheader
    91.8

    96.5

    92
  • tableheader
    92.1

    96.4

    -
  • tableheader
    83.4

    89.7

    -
  • tableheader
    83.4

    89.7

    84
  • tableheader
    -

    -

    80
  • tableheader
    73.6

    85.7

    74
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    43.1

    62.8

    -
  • tableheader
    -

    -

    -
  • tableheader
    24.3

    43.4

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
For a wider analysis go to PhosphoNET Evolution in PhosphoNET
 

Binding Proteins

Examples of known interacting proteins
hiddentext
No. Name – UniProt ID
1 RPL35 - P42766
 

Regulation

Activation:
Agonist binding to the phorbol ester binding site disrupts this, releasing the kinase domain to allow N-terminus-mediated dimerization and kinase activation by transautophosphorylation.
Inhibition:
Maintained in an inactive, closed conformation by an interaction between the kinase domain and the negative autoregulatory C-terminal coiled-coil region.
Synthesis:
NA
Degradation:
NA
 

Protein Kinase Specificity

Matrix of observed frequency (%) of amino acids in aligned protein substrate phosphosites

Kinections GIF
Matrix Type:
Derived from alignment of 31 peptides phosphorylated by recombinant MRCKb in vitro tested in-house by Kinexus.
Domain #:
1
 

Inhibitors

For further details on these inhibitors click on the Compound Name and enter it into DrugKiNET or click on the ID's
Based on in vitro and/or in vivo phosphorylation data
Compound Name KD, Ki or IC50 (nM) PubChem ID ChEMBL ID PubMed ID
Staurosporine Kd = 37 nM 5279 18183025
A674563 Kd = 95 nM 11314340 379218 22037378
AT9283 IC50 > 100 nM 24905142 19143567
Foretinib Kd = 330 nM 42642645 1230609 22037378
SB203580 Kd = 400 nM 176155 10 18183025
Alsterpaullone; 2-Cyanoethyl IC50 = 500 nM 16760286 260138 22037377
Cdk1/2 Inhibitor III IC50 = 500 nM 5330812 261720 22037377
SB202190 Kd = 640 nM 5353940 278041 18183025
Doramapimod Kd = 910 nM 156422 103667 18183025
Nilotinib Kd = 910 nM 644241 255863 22037378
A 443654 IC50 < 1 µM 10172943 379300 19465931
Lestaurtinib Kd = 1 µM 126565 22037378
MK5108 IC50 > 1 µM 24748204 20053775
Silmitasertib IC50 > 1 µM 24748573 21174434
SNS314 IC50 > 1 µM 16047143 514582 18678489
WZ3146 Kd > 1 µM 44607360 20033049
WZ4002 Kd > 1 µM 44607530 20033049
Dasatinib Kd = 1.2 µM 11153014 1421 18183025
Vandetanib Kd = 2.2 µM 3081361 24828 18183025
Alvocidib Kd = 3.3 µM 9910986 428690 18183025
Erlotinib Kd = 3.4 µM 176870 553 18183025
SureCN4875304 IC50 > 3.5 µM 46871765 20472445
JNJ-28871063 IC50 > 4 µM 17747413 17975007
Axitinib Kd = 4.8 µM 6450551 1289926 22037378
NVP-TAE684 Kd = 4.8 µM 16038120 509032 22037378
 

Disease Linkage

General Disease Association:

Musculoskeletal disorders
Specific Diseases (Non-cancerous):

Myotonic dystrophy
Comments:
Myotonic dystrophy is an inherited disease that affects multiple systems of the body. Symptoms include the wasting of the muscles (muscular dystrophy), cataracts, heart defects, endocrine dysfunction, and myotonia.
 
Gene Expression in Cancers:

TranscriptoNET (www.transcriptonet.ca) analysis with mRNA expression data retrieved from the National Center for Biotechnology Information's Gene Expression Omnibus (GEO) database, which was normalized against 60 abundantly and commonly found proteins, indicated altered expression for this protein kinase as shown here as the percent change from normal tissue controls (%CFC) as supported with the Student T-test in the following types of human cancers: Bladder carcinomas (%CFC= +77, p<0.0002); Breast epithelial cell carcinomas (%CFC= +60, p<0.013); Pituitary adenomas (ACTH-secreting) (%CFC= +97); and Skin squamous cell carcinomas (%CFC= +124, p<0.021). The COSMIC website notes an up-regulated expression score for MRCKb in diverse human cancers of 376, which is 0.8-fold of the average score of 462 for the human protein kinases. The down-regulated expression score of 325 for this protein kinase in human cancers was 5.4-fold of the average score of 60 for the human protein kinases.
Mutagenesis Experiments:

Insertional mutagenesis studies in mice support a role for this protein kinase in mouse cancer oncogenesis. The MRCK-ß protein posesses many functional domains, including three independent coiled-coil (CC) domains involved in the dimerization that is critical for the activation of the protein, a cysteine-rich motif similar to that of protein kinase C (PKC), and potentially a pleckstrin homology (PH) domain. Deletion of the two distal CC domains (CC2 and CC3; amino acid residues 658-930) results in a constitutively active kinase, indicating a role for these domains in the autoinhibition of the kinase catalytic domain of the protein.
Mutation Rate in All Cancers:

Percent mutation rates per 100 amino acids length in human cancers: 0.06 % in 24972 diverse cancer specimens. This rate is only -18 % lower than the average rate of 0.075 % calculated for human protein kinases in general.
Mutation Rate in Specific Cancers:

Highest percent mutation rates per 100 amino acids length in human cancers: 0.24 % in 864 skin cancers tested; 0.22 % in 1272 large intestine cancers tested; 0.2 % in 589 stomach cancers tested; 0.18 % in 603 endometrium cancers tested; 0.15 % in 548 urinary tract cancers tested; 0.13 % in 273 cervix cancers tested; 0.12 % in 710 oesophagus cancers tested; 0.09 % in 127 biliary tract cancers tested; 0.08 % in 1822 lung cancers tested; 0.07 % in 238 bone cancers tested; 0.06 % in 1512 liver cancers tested; 0.06 % in 1372 breast cancers tested; 0.04 % in 942 upper aerodigestive tract cancers tested; 0.04 % in 833 ovary cancers tested; 0.04 % in 1276 kidney cancers tested; 0.03 % in 881 prostate cancers tested; 0.03 % in 2082 central nervous system cancers tested; 0.03 % in 1459 pancreas cancers tested; 0.01 % in 2009 haematopoietic and lymphoid cancers tested.
Frequency of Mutated Sites:

None > 3 in 20,256 cancer specimens
Comments:
Only 6 deletions, 2 insertions and no complex mutations are noted on the COSMIC website.
 
COSMIC Entry:
CDC42BPB
OMIM Entry:
614062
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