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Updated November 2019

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Nomenclature

Short Name:
PIK3C2A
Full Name:
Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit alpha
Alias:
  • CPK-M
  • Phosphoinositide-3-kinase, class 2, alph, polypeptide
  • PI3K C2 alpha
  • PI3K-C2alpha
  • PtdIns-3-kinase C2 alpha
  • EC 2.7.1.154
  • P3C2A
  • Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha
  • Phosphoinositide 3-kinase
  • Phosphoinositide 3-Kinase-C2-alpha

Classification

Type:
Protein-serine/threonine kinase
Group:
Atypical
Family:
SubFamily:
NA
 
 

Specific Links

General Links

ClustalW2
GPS-Cuckoo
Human Protein Atlas
Kinase.com
Kinase Research
Kinasource
Kinomer
Netphorest
NetworKIN
Phosida
PhosphoElm
Protein Blast
ScanSite
String

Structure

Mol. Mass (Da):
190680
# Amino Acids:
1686
# mRNA Isoforms:
2
mRNA Isoforms:
190,680 Da (1686 AA; O00443); 53,742 Da (483 AA; O00443-2)
4D Structure:
1D Structure:
Retrieve Gene Sequence
Retrieve Full Protein Sequence
Retrieve Catalytic Domain Sequence
 
Subfamily Alignment
subfamily domain
 
Domain Distribution:
Start End Domain
 

Post-translation Modifications

For detailed information on phosphorylation of this kinase go to PhosphoNET
Acetylated:
K94, K532, K872, K881, K889, K1611.
Methylated:
R139, K280.
Serine phosphorylated:

S5, S6, S8, S60, S108, S124, S126, S234, S259, S327, S329, S336, S338, S409, S612, S630, S665, S672, S673, S771, S772, S778, S1281, S1551, S1553, S1633.
Threonine phosphorylated:

T49, T120, T412, T614, T667.
Tyrosine phosphorylated:

Y68, Y73, Y406, Y737, Y900, Y901, Y1595, Y1632.
Ubiquitinated:
K94, K112, K229, K252, K261, K267, K278, K301, K579, K613, K872, K881, K889, K1162, K1217.
 

Distribution

Based on gene microarray analysis from the NCBI
Human Tissue Distribution
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
  • adipose
    64

    1683

    67

    1187

  • adrenal
    2

    47

    18

    41

  • bladder
    8

    199

    31

    178

  • brain
    9

    235

    269

    320

  • breast
    36

    931

    79

    608

  • cervix
    3

    86

    109

    84

  • colon
    5

    118

    99

    278

  • heart
    12

    308

    59

    532

  • intestine
    31

    808

    10

    771

  • kidney
    8

    212

    156

    178

  • liver
    4

    99

    52

    103

  • lung
    30

    787

    182

    676

  • lymphnode
    6

    158

    43

    130

  • ovary
    3

    81

    9

    92

  • pancreas
    2

    63

    19

    59

  • pituitary
    4

    96

    48

    110

  • prostate
    4

    110

    173

    143

  • salivarygland
    5

    129

    39

    133

  • skeletalmuscle"
    4

    102

    128

    77

  • skin
    36

    929

    255

    653

  • spinalcord
    8

    208

    49

    222

  • spleen
    7

    185

    51

    202

  • stomach
    9

    233

    32

    193

  • testis
    11

    300

    39

    290

  • thymus
    4

    94

    49

    96

  • thyroid
    24

    631

    187

    596

  • tonsil
    5

    142

    46

    128

  • trachea
    5

    129

    39

    126

  • uterus
    10

    268

    38

    251

  • reticulocytes"
    4

    93

    56

    96

  • t-lymphocytes
    27

    703

    18

    369

  • b-lymphocytes
    100

    2611

    61

    7326

  • neutrophils
    14

    373

    180

    787

  • macrophages
    28

    743

    234

    642

  • sperm
    10

    251

    126

    414

 

Evolution

Species Conservation
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
  • tableheader
    100

    100

    100
  • tableheader
    99.5

    99.6

    100
  • tableheader
    -

    -

    96
  • tableheader
    -

    -

    92
  • tableheader
    -

    -

    -
  • tableheader
    93.5

    96.8

    94
  • tableheader
    -

    -

    -
  • tableheader
    90.2

    94.5

    90
  • tableheader
    31.1

    50.6

    90
  • tableheader
    -

    -

    -
  • tableheader
    83.3

    90.2

    -
  • tableheader
    75.4

    85.4

    76
  • tableheader
    -

    -

    69
  • tableheader
    60.2

    75.3

    64
  • tableheader
    -

    -

    -
  • tableheader
    32.5

    51

    40
  • tableheader
    33.9

    54.7

    -
  • tableheader
    -

    -

    34
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
For a wider analysis go to PhosphoNET Evolution in PhosphoNET
 

Regulation

Activation:
NA
Inhibition:
NA
Synthesis:
NA
Degradation:
NA
 

Known Downstream Substrates

For further details on these substrates click on the Substrate Short Name or UniProt ID. Phosphosite Location is hyperlinked to PhosphoNET predictions.
Based on in vitro and/or in vivo phosphorylation data

Substrate Short Name UniProt ID (Human) Phosphosite Location Phosphosite Sequence Effect of Phosphorylation
CEACAM1 P13688 Y520 LTATEIIYSEVKKQ_
 

Inhibitors

For further details on these inhibitors click on the Compound Name and enter it into DrugKiNET or click on the ID's
Based on in vitro and/or in vivo phosphorylation data
Compound Name KD, Ki or IC50 (nM) PubChem ID ChEMBL ID PubMed ID
PF-04691502 Ki = 1.8 nM 25033539 21750219
CHEMBL1474834 Kd = 40 nM 44223970 1474834 21450467
Torin1 IC50 = 176 nM 49836027 1255226
 

Disease Linkage

General Disease Association:

Cancer, cardiovascular, neurological, endocrine, and respiratory disorders
Specific Diseases (Non-cancerous):

Myocardial infarction; Pneumonia; Status Asthmaticus; Neuroleptic Malignant syndrome; Acute myocardial Infarction; Pericardial Effusion; Dysphagia; Atrioventricular block; Trichinosis; Protein S deficiency; Gas gangrene; Acute kidney failure (AKI, ARF); Legionnaires' disease; Acute mountain sickness (AMS); Compartment syndrome; Chronic progressive external ophthalmoplegia (PEO); Calciphylaxis; Nephropathia epidemica; Intermediate coronary syndrome; Erysipelas; Adult dermatomyositis; Bronchiolitis obliterans organizing pneumonia (BOOP); Scleromyxedema; Necrotizing fasciitis; Inferior myocardial Infarction; Vibrio vulnificus Infection; Silent myocardial infarction; Autoimmune hypoparathyroidism; Amyopathic dermatomyositis (ADM); Wandering spleen; Creatine phosphokinase, Elevated serum; Sine scleroderma
Comments:
Serotonin Syndrome can arise from overdose of some drugs and the recreational use of others. Serotonin Syndrome can affect the bone marrow, bone, and brain tissues. >Acute Febrile Neutrophilic Dermatosis (SS) is characterized by the development of arthritis, fever, and painful skin lesions. SS has a relation to leukemia and vasculitis. Clathrin binding to PIK3C2A can be reduced through the L103A, L104A, L105A, D106A, and D107A mutations, in conjunction. S259A/D/E can inhibit phosphorylation of PIK3C2A but will have no effect on enzyme activity. Proteolysis has been inhibited with a PIK3C2A S259A mutation. The lipid kinase activity of PIK3C2A can be inhibited with a D1250A mutation, which will also mediate clathrin localization through the modulation of the clathrin-binding domain. The affinity for PIK3C2A to bind Phosphatidylinositol (4,5) bisphosphate can be decreased 5-fold with a L1491A mutation, decreased 7-fold with a R1488A or V1490A mutation, decreased 23-fold with a R1493A mutation, or fully inhibited with a R1503A mutation. >Status Asthmaticus is a respiratory disease that can be life threatening due to lack of response in patients to standard treatment. >The rare Neuroleptic Malignant Syndrome is a neuronal syndrome which can be characterized by sweating, high fever, fluctuating blood pressure, stupor, muscle rigidity, and autonomic dysfunction which can lead to life-threatening situations. >Pericardial Effusion is characterized by fluid build-up in the pericardial cavity. Trichinosis is a rare condition where parasitic helminthes can induce diarrhea, vomiting, and abdominal pain. >Protein S Deficiency is characterized by the increased risk of forming a thrombosis due to improper regulation of blood clotting factors. >Acute Kidney Failure (AKI, ARF) is characterized by the sudden onset of kidney failure and can affect the kidney, bone, or heart tissues. Legionnaires' Disease is a form of pneumonia arising from bacteria. >Acute Mountain Sickness (AMS) is a sensitivity to low partial oxygen pressure that occurs at high altitude. >Compartment Syndrome is a rare cardiovascular disease where pressure in a portion of the body is increased either transiently or chronically. >Chronic Progressive External Ophthalmoplegia (PEO) manifests as the loss of muscle function controlling eye or eyelid movement. PEO can affect the eye, skeletal muscles, and the retina. Calciphylaxis originates from the abnormal accumulation of calcium in the walls of vessels, leading to full or partial obstruction of blood flow. >Nephropathia Epidemica is a rare disorder that often begins with a fever, but can lead to kidney infection. Erysipelas is a skin rash localized to one region of the body and which often develops from a skin infection.> Adult Dermatomyositis has a relation to dermatocytosis and to calcinosis. >Bronchiolitis Obliterans Organizing Pneumonia is a rare condition where the bronchioles of the lung are constricted, partly inhibiting airflow. Scleromyxedema is characterized by an abnormal level of mucin in the skin. Necrotizing Fasciitis is characterized by bacterial infection on the skin's surface. >Vibrio Vulnificus Infection is a rare condition related to septic shock and liver disease. Autoimmune Hypoparathyroidismis has a relation to the proton pump inhibitor pathway and can affect the bone, liver, and or endothelial tissues. >Amyopathic Dermatomyositis (ADM) has a similar phenotype as dermatomyositis, except that muscle weakness does not occur in ADM. >Wandering Spleen is a rare disorder characterized by having no fixed location for the spleen due to the development of ligaments to hold the spleen in one place do not develop effectively. >Sine Scleroderma is a rare disorder characterized by the accumulation of fibrous scar tissue on various portions of the body. Sine Scleroderma only affects internal organs and does not often affect skin.
 
Gene Expression in Cancers:

TranscriptoNET (www.transcriptonet.ca) analysis with mRNA expression data retrieved from the National Center for Biotechnology Information's Gene Expression Omnibus (GEO) database, which was normalized against 60 abundantly and commonly found proteins, indicated altered expression for this protein kinase as shown here as the percent change from normal tissue controls (%CFC) as supported with the Student T-test in human Bladder carcinomas (%CFC= +122, p<0.0004). The COSMIC website notes an up-regulated expression score for PIK3C2A in diverse human cancers of 327, which is 0.7-fold of the average score of 462 for the human protein kinases. The down-regulated expression score of 155 for this protein kinase in human cancers was 2.6-fold of the average score of 60 for the human protein kinases.
Mutagenesis Experiments:

Insertional mutagenesis studies in mice support a role for this protein kinase in mouse cancer oncogenesis. PIK3C2A can affect intracellular vesicle trafficking, insulin signalling, insulin secretion, glucose transporter translocation to the plasma membrane, and glucose uptake (controlled by insulin). Clathrin binding to PIK3C2A can be reduced through the L103A, L104A, L105A, D106A, and D107A mutations, in conjunction. S259A/D/E can inhibit phosphorylation of PIK3C2A but will have no effect on enzyme activity. Proteolysis can be inhibited with a PIK3C2A S259A mutation. The lipid kinase activity of PIK3C2A can be inhibited with a D1250A mutation, which will also mediate clathrin localization through the modulation of the clathrin-binding domain. The affinity for PIK3C2A to bind Ptdddins (4,5) bisphosphate can be decreased 5-fold with a L1491A mutation, decreased 7-fold with a R1488A or V1490A mutation, decreased 23-fold with a R1493A mutation, or fully inhibited with a R1503A mutation.
Mutation Rate in All Cancers:

Percent mutation rates per 100 amino acids length in human cancers: 0.05 % in 25453 diverse cancer specimens. This rate is only -28 % lower than the average rate of 0.075 % calculated for human protein kinases in general.
Mutation Rate in Specific Cancers:

Highest percent mutation rates per 100 amino acids length in human cancers: 0.27 % in 1275 large intestine cancers tested; 0.19 % in 866 skin cancers tested; 0.19 % in 603 endometrium cancers tested; 0.18 % in 570 stomach cancers tested; 0.11 % in 548 urinary tract cancers tested; 0.09 % in 273 cervix cancers tested; 0.07 % in 1933 lung cancers tested; 0.07 % in 1512 liver cancers tested; 0.05 % in 127 biliary tract cancers tested; 0.04 % in 943 prostate cancers tested; 0.04 % in 710 oesophagus cancers tested; 0.04 % in 558 thyroid cancers tested; 0.04 % in 1345 kidney cancers tested; 0.03 % in 866 ovary cancers tested; 0.02 % in 382 soft tissue cancers tested; 0.02 % in 1468 pancreas cancers tested; 0.02 % in 1316 breast cancers tested; 0.02 % in 1078 upper aerodigestive tract cancers tested; 0.01 % in 2103 central nervous system cancers tested; 0.01 % in 1982 haematopoietic and lymphoid cancers tested.
Frequency of Mutated Sites:

Most frequent mutations with the number of reports indicated in brackets: M1183V (3); M1183I (2); F1206L (3); F1206S (2).
Comments:
Only 4 deletions,5 insertions, and no complex mutations are noted on the COSMIC website.
 
COSMIC Entry:
PIK3C2A
OMIM Entry:
603601
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