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Updated November 2019

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Nomenclature

Short Name:
PKCi
Full Name:
Protein kinase C, iota/lambda type
Alias:
  • APKC-lambda,iota
  • MGC26534
  • NPKC-iota
  • PKC lambda
  • PKC-iota
  • PKCL; PRKCI, PRKCL
  • DXS1179E
  • EC 2.7.11.13
  • HINT1
  • KPCI

Classification

Type:
Protein-serine/threonine kinase
Group:
AGC
Family:
PKC
SubFamily:
Iota
 
 

Specific Links

Entrez-Gene Entry: 5584
Entrez-Protein Entry: NP_002731
GeneCards Entry: PKC
KinBASE Entry: PKCI
OMIM Entry: 600539
Pfam Entry: P41743
PhosphoNET Entry: P41743
Phosphosite Plus Entry: 644
Protein Data Bank Entry: 1VD2
ScanSite Entry: P41743
Source Entry: PRKCI
UCSD-Nature Entry: A001929
UniProt Entry: P41743
Kinexus Products: PKCi
CREB1 (123-135) KinSub - cyclic-AMP response element binding protein-1 (K123-R135, human) peptide; Crebtide protein kinase substrate peptide - Powder PE-01ACP95
PKCISelectide - PKCi (PRKCI) protein kinase substrate peptide - Powder PE-01BIU90

General Links

ClustalW2
GPS-Cuckoo
Human Protein Atlas
Kinase.com
Kinase Research
Kinasource
Kinomer
Netphorest
NetworKIN
Phosida
PhosphoElm
Protein Blast
ScanSite
String

Structure

Mol. Mass (Da):
68262
# Amino Acids:
596
# mRNA Isoforms:
1
mRNA Isoforms:
68,262 Da (596 AA; P41743)
4D Structure:
Forms a complex with SQSTM1 and MP2K5 By similarity. Interacts directly with SQSTM1 Probable. Interacts with IKBKB. Interacts with PARD6A, PARD6B and PARD6G. Part of a quaternary complex containing aPKC, PARD3, a PARD6 protein (PARD6A, PARD6B or PARD6G) and a GTPase protein (CDC42 or RAC1). Part of a complex with LLGL1 and PARD6B. Interacts with ADAP1/CENTA1. Interaction with SMG1, through the ZN-finger domain, activates the kinase activity. Interacts with CDK7. Forms a complex with RAB2A and GAPDH involved in recruitment onto the membrane of vesicular tubular clusters (VTCs)
1D Structure:
Retrieve Gene Sequence
Retrieve Full Protein Sequence
Retrieve Catalytic Domain Sequence
 
3D Image (rendered using PV Viewer):

PDB ID
3A8W

Subfamily Alignment
subfamily domain
 
Domain Distribution:
Start End Domain
16 97 PB1
132 181 C1
254 522 Pkinase
523 594 Pkinase_C
25 108 OPR
 

Kinexus Products

Click on entries below for direct links to relevant products from Kinexus for this protein kinase.
hiddentext
○ CREB1 (123-135) KinSub - cyclic-AMP response element binding protein-1 (K123-R135, human) peptide; Crebtide protein kinase substrate peptide - Powder PE-01ACP95
○ PKCISelectide - PKCi (PRKCI) protein kinase substrate peptide - Powder PE-01BIU90
 

Post-translation Modifications

For detailed information on phosphorylation of this kinase go to PhosphoNET
Serine phosphorylated:

S7, S8, S11, S19, S44, S46, S222, S223, S226, S246, S247, S248, S411+, S459, S591.
Threonine phosphorylated:

T3, T9, T13, T409+, T410+, T412+, T416+, T557, T564.
Tyrosine phosphorylated:

Y125, Y136+, Y256, Y265, Y271, Y325+, Y334, Y397, Y430, Y584.
Ubiquitinated:
K380, K488.
 

Distribution

Based on gene microarray analysis from the NCBI
Human Tissue Distribution
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
  • adipose
    34

    1117

    42

    1119

  • adrenal
    3

    96

    24

    99

  • bladder
    5

    152

    3

    177

  • brain
    20

    645

    136

    976

  • breast
    27

    878

    36

    776

  • cervix
    10

    332

    119

    437

  • colon
    15

    482

    51

    610

  • heart
    100

    3245

    59

    5933

  • intestine
    22

    718

    24

    607

  • kidney
    5

    176

    133

    227

  • liver
    2

    73

    38

    92

  • lung
    21

    668

    271

    708

  • lymphnode
    2

    67

    36

    63

  • ovary
    3

    110

    21

    95

  • pancreas
    3

    112

    31

    154

  • pituitary
    3

    111

    24

    124

  • prostate
    9

    308

    434

    2010

  • salivarygland
    6

    195

    18

    185

  • skeletalmuscle"
    4

    119

    123

    136

  • skin
    19

    632

    162

    704

  • spinalcord
    4

    121

    28

    153

  • spleen
    3

    89

    33

    132

  • stomach
    5

    167

    14

    109

  • testis
    5

    155

    18

    125

  • thymus
    5

    171

    28

    268

  • thyroid
    36

    1153

    78

    1270

  • tonsil
    3

    104

    39

    89

  • trachea
    4

    146

    18

    136

  • uterus
    4

    116

    18

    119

  • reticulocytes"
    3

    89

    42

    113

  • t-lymphocytes
    17

    561

    30

    563

  • b-lymphocytes
    52

    1694

    51

    3810

  • neutrophils
    18

    587

    81

    1336

  • macrophages
    24

    772

    83

    675

  • sperm
    2

    80

    48

    88

 

Evolution

Species Conservation
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
  • tableheader
    100

    100

    100
  • tableheader
    66.7

    78.6

    100
  • tableheader
    96.8

    97.5

    98
  • tableheader
    -

    -

    99
  • tableheader
    -

    -

    97
  • tableheader
    84.3

    84.9

    98.5
  • tableheader
    -

    -

    -
  • tableheader
    98.3

    98.8

    98.5
  • tableheader
    72.3

    83.6

    99
  • tableheader
    -

    -

    -
  • tableheader
    59.9

    60.4

    -
  • tableheader
    71.5

    83

    95
  • tableheader
    89.8

    94.5

    93
  • tableheader
    88.8

    93

    90
  • tableheader
    -

    -

    -
  • tableheader
    36.4

    54.1

    70
  • tableheader
    68

    78.2

    -
  • tableheader
    58.1

    74.2

    61
  • tableheader
    63.6

    72.5

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    24

    35.7

    -
For a wider analysis go to PhosphoNET Evolution in PhosphoNET
 

Binding Proteins

Examples of known interacting proteins
hiddentext
No. Name – UniProt ID
1 PARD6A - Q9NPB6
2 CDC42 - P60953
3 PARD3 - Q8TEW0
4 PARD6B - Q9BYG5
5 YWHAZ - P63104
6 ANXA1 - P04083
7 GAPDH - P04406
8 IRAK1 - P51617
9 BAD - Q92934
10 NULL - Q5BKU6
11 MAP2K5 - Q13163
12 SMG1 - Q96Q15
13 SRC - P12931
14 RAB2A - P61019
15 RHOQ - P17081
 

Regulation

Activation:
Phosphorylation of Tyr-325, Thr-403 and possible Thr-412 increases phosphotransferase activity. Might be a target for novel lipid activators that are elevated during nutrient-stimulated insulin secretion.
Inhibition:
NA
Synthesis:
NA
Degradation:
NA
 

Known Upstream Kinases

For further details on these substrates click on the Substrate Short Name or UniProt ID. Phosphosite Location is hyperlinked to PhosphoNET predictions.
Based on in vitro and/or in vivo phosphorylation data

Kinase Short Name UniProt ID (Human) Phosphosite Location Phosphosite Sequence Effect of Phosphorylation
SRC P12931 Y256 RVIGRGSYAKVLLVR
SRC P12931 Y271 LKKTDRIYAMKVVKK
SRC P12931 Y325 RLFFVIEYVNGGDLM +
 

Known Downstream Substrates

For further details on these substrates click on the Substrate Short Name or UniProt ID. Phosphosite Location is hyperlinked to PhosphoNET predictions.
Based on in vitro and/or in vivo phosphorylation data

Substrate Short Name UniProt ID (Human) Phosphosite Location Phosphosite Sequence Effect of Phosphorylation
MARK3 P27448 T587 RGTASRSTFHGQPRE
p70S6Kb (RPS6KB2) Q9UBS0 S473 PPSGTKKSKRGRGRP +
Tau iso8 P10636-8 S258 PDLKNVKSKIGSTEN
Tau iso8 P10636-8 S293 NVQSKCGSKDNIKHV
Tau iso8 P10636-8 S324 KVTSKCGSLGNIHHK
Tau iso8 P10636-8 S352 DFKDRVQSKIGSLDN
AID Q9GZX7 T140 GVQIAIMTFKDYFYC
Bad Q92934 S118 GRELRRMSDEFVDSF -
Bad Q92934 S75 EIRSRHSSYPAGTED -
Bad Q92934 S99 PFRGRSRSAPPNLWA -
Calpain 2 P17655 S368 DGNWRRGSTAGGCRN
Ezrin P15311 T567 QGRDKYKTLRQIRQG
IRAK1 P51617 T66 CERSGQRTASVLWPW ?
MARK2 Q7KZI7 T596 RGVSSRSTFHAGQLR -
 

Protein Kinase Specificity

Matrix of observed frequency (%) of amino acids in aligned protein substrate phosphosites

Kinections GIF
Matrix Type:
Experimentally derived from alignment of 20 known protein substrate phosphosites.
Domain #:
1
 

Inhibitors

For further details on these inhibitors click on the Compound Name and enter it into DrugKiNET or click on the ID's
Based on in vitro and/or in vivo phosphorylation data
Compound Name KD, Ki or IC50 (nM) PubChem ID ChEMBL ID PubMed ID
Icotinib IC50 > 1 µM 22024915 22112293
MK5108 IC50 > 1 µM 24748204 20053775
Silmitasertib IC50 > 1 µM 24748573 21174434
SNS314 IC50 > 1 µM 16047143 514582 18678489
WZ3146 Kd > 1 µM 44607360 20033049
WZ4002 Kd > 1 µM 44607530 20033049
Ruboxistaurin Kd = 1.4 µM 153999 91829 22037378
Lestaurtinib Kd = 1.8 µM 126565 22037378
SureCN4875304 IC50 > 3.5 µM 46871765 20472445
JNJ-28871063 IC50 > 4 µM 17747413 17975007
SureCN2579964 IC50 < 4 µM 24948986 22934575
Staurosporine IC50 = 80 pM 5279 12166950
Ophiocordin Ki = 5.3 nM 5287736 60254 16134928
Ro-31-8220 IC50 = 10 nM 5083 6291
Ro-32-0432 IC50 = 17.2 nM 127757 26501
K-252a; Nocardiopsis sp. IC50 = 33 nM 3813 281948
N-Benzoylstaurosporine IC50 = 50 nM 56603681 608533
AT9283 IC50 > 100 nM 24905142 19143567
Bisindolylmaleimide IC50 = 190 nM 2399 266487 8151612
Bisindolylmaleimide IV IC50 = 190 nM 2399 266487 8151612
GSK690693 Kd = 250 nM 16725726 494089 22037378
Arcyriaflavin A IC50 = 310 nM 5327723 268368 8151612
Alsterpaullone; 2-Cyanoethyl IC50 > 1 µM 16760286 260138 22037377
Bisindolylmaleimide I IC50 > 1 µM 2396 7463 22037377
GDC-0068 IC50 = 1 µM 24995523 22934575
Gö6983 IC50 > 1 µM 3499 261491 22037377
 

Disease Linkage

General Disease Association:

Cancer
Specific Cancer Types:
Esophageal squamous cell carcinomas; Lung squamous cell carcinomas; Glioblastoma; Non-small cell lung cancer (NSCLC)
Comments:
PKCi may be an oncoprotein (OP). PKCi activity mediates the resistance of BCR-ABL transformed leukemia cells to apoptotic inducing drugs, thus the protein may play a role in cancer progression and cell survival through the inhibition of apoptosis. In glioblastoma cancer cell lines, PKCi acts downstream of PI3K as an anti-apoptotic factor through phosphorylation and inhibition of the pro-apoptotic factor BAD. In small-cell lung cancer cell lines, PKCi forms a protein complex with PARD6A and ECT2 which functions to positively regulate ECT2 oncogenic activity, thus promoting tumour growth and metastasis. In addition, the transformation and tumour progression of both lung and esophageal squamous cell carcinoma is associated with the amplification of the chromosomal region 3q26, which contains the PKCi, ECT2, PIK3CA, SOX2 and MDS1 genes, thus implicating PKCi in the progression of these cancers. Furthermore, elevated expression of PKCi in esophageal squamous cell carcinoma specimens was significantly correlated with tumour size, metastasis, and advanced stages of cancer progression. Similarly, PKCi over-expression in lung squamous cell carcinoma was associated with the maintenance of a stem-like phenotype of the cancer cells through cooperative action with SOX2 and influence on the sonic-hedgehog (Shh) signalling pathway. Therefore, PKCi is suggested to act as an oncoprotein in the development of several cancer types.
 
Gene Expression in Cancers:

TranscriptoNET (www.transcriptonet.ca) analysis with mRNA expression data retrieved from the National Center for Biotechnology Information's Gene Expression Omnibus (GEO) database, which was normalized against 60 abundantly and commonly found proteins, indicated altered expression for this protein kinase as shown here as the percent change from normal tissue controls (%CFC) as supported with the Student T-test in the following types of human cancers: Bladder carcinomas (%CFC= +109, p<0.014); Breast epithelial carcinomas (%CFC= -47, p<0.04); Cervical cancer (%CFC= -49, p<0.003); Malignant pleural mesotheliomas (MPM) tumours (%CFC= +215, p<0.0001); Ovary adenocarcinomas (%CFC= +125, p<0.007); Prostate cancer - primary (%CFC= +95, p<0.0001); Skin squamous cell carcinomas (%CFC= +152, p<0.064). The COSMIC website notes an up-regulated expression score for PKCi in diverse human cancers of 1080, which is 2.3-fold of the average score of 462 for the human protein kinases. The down-regulated expression score of 27 for this protein kinase in human cancers was 0.5-fold of the average score of 60 for the human protein kinases.
Mutagenesis Experiments:

Insertional mutagenesis studies in mice support a role for this protein kinase in mouse cancer oncogenesis.
Mutation Rate in All Cancers:

Percent mutation rates per 100 amino acids length in human cancers: 0.09 % in 25377 diverse cancer specimens. This rate is only 24 % higher than the average rate of 0.075 % calculated for human protein kinases in general.
Mutation Rate in Specific Cancers:

Highest percent mutation rates per 100 amino acids length in human cancers: 0.74 % in 1093 large intestine cancers tested; 0.35 % in 805 skin cancers tested; 0.17 % in 1941 lung cancers tested.
Frequency of Mutated Sites:

Most frequent mutations with the number of reports indicated in brackets: R480C (10); R480H (3).
Comments:
Six deletions (all at T276fs*7), 4 insertions (all at T276fs*16), and no complex mutations are noted on the COSMIC website. About 21% of the point mutations are silent and do not change the amino acid sequence of the protein kinase.
 
COSMIC Entry:
PRKCI
OMIM Entry:
600539
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