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Updated November 2019

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Nomenclature

Short Name:
IKKb
Full Name:
Inhibitor of nuclear factor kappa B kinase beta subunit
Alias:
  • EC 2.7.11.10
  • IKKB
  • IKK-beta
  • NFKBIKB
  • IKBKINASE
  • I-kappa-B kinase 2
  • I-kappa-B-kinase beta
  • IkBKB
  • IKK2

Classification

Type:
Protein-serine/threonine kinase
Group:
Other
Family:
IKK
SubFamily:
NA
 
 

Specific Links

BioCarta Entry: nfkb pathway
Entrez-Gene Entry: 3551
Entrez-Protein Entry: NP_001547
KinBASE Entry: IKKB
OMIM Entry: 603258
Pfam Entry: O14920
PhosphoNET Entry: O14920
Phosphosite Plus Entry: 459
Protein Data Bank Entry: 3BRT
ScanSite Entry: O14920
UCSD-Nature Entry: A001172
UniProt Entry: O14920
Kinexus Products: IKKb
Inhibitor of nuclear factor kappa B kinase beta subunit pan-specific antibody AB-NK076-5
Inhibitor of nuclear factor kappa B kinase beta subunit pan-specific antibody AB-NK076-6
IKKtide KinSub - IKK protein kinase substrate peptide - Powder PE-01ADB95
Inhibitor of nuclear factor kappa B kinase beta subunit (C716-T735, human) peptide - Powder PE-01BDG99
Inhibitor of nuclear factor kappa B kinase beta subunit (M1-E19, human) peptide - Powder PE-01BDH90
IKKSelectide - IKKa (CHUK) protein kinase substrate peptide - Powder PE-01BHN95

General Links

ClustalW2
GPS-Cuckoo
Human Protein Atlas
Kinase.com
Kinase Research
Kinasource
Kinomer
Netphorest
NetworKIN
Phosida
PhosphoElm
Protein Blast
ScanSite
String

Structure

Mol. Mass (Da):
86,564
# Amino Acids:
756
# mRNA Isoforms:
4
mRNA Isoforms:
86,564 Da (756 AA; O14920); 85,945 Da (754 AA; O14920-2); 79,509 Da (697 AA; O14920-4); 29,236 Da (256 AA; O14920-3)
4D Structure:
Component of the I-kappa-B-kinase (IKK) core complex consisting of CHUK, IKBKB and IKBKG; probably four alpha/CHUK-beta/IKBKB dimers are associated with four gamma/IKBKG subunits. The IKK core complex seems to associate with regulatory or adapter proteins to form a IKK-signalosome holo-complex. Part of a complex composed of NCOA2, NCOA3, CHUK/IKKA, IKBKB, IKBKG and CREBBP. Part of a 70-90 kDa complex at least consisting of CHUK/IKKA, IKBKB, NFKBIA, RELA, IKBKAP and MAP3K14. Found in a membrane raft complex, at least composed of BCL10, CARD11, DPP4 and IKBKB. Interacts with SQSTM1 through PRKCZ or PRKCI. Forms an NGF-induced complex with IKBKB, PRKCI and TRAF6. May interact with MAVS/IPS1. Interacts with NALP2. Interacts with TICAM1. Interacts with Yersinia yopJ. Interacts with FAF1; the interaction disrupts the IKK complex formation. Interacts with ATM. Part of a ternary complex consisting of TANK, IKBKB and IKBKG. Interacts with NIBP; the interaction is direct. Interacts with ARRB1 and ARRB2. Interacts with TRIM21.
1D Structure:
Retrieve Gene Sequence
Retrieve Full Protein Sequence
Retrieve Catalytic Domain Sequence
 
3D Image (rendered using PV Viewer):

PDB ID
4E3C

Subfamily Alignment
subfamily domain
 
Domain Distribution:
Start End Domain
15 312 Pkinase
458 479 Leucine-zipper
705 742 IKK
 

Kinexus Products

Click on entries below for direct links to relevant products from Kinexus for this protein kinase.
hiddentext
○ Inhibitor of nuclear factor kappa B kinase beta subunit pan-specific antibody AB-NK076-5
○ Inhibitor of nuclear factor kappa B kinase beta subunit pan-specific antibody AB-NK076-6
○ IKKtide KinSub - IKK protein kinase substrate peptide - Powder PE-01ADB95
○ Inhibitor of nuclear factor kappa B kinase beta subunit (C716-T735, human) peptide - Powder PE-01BDG99
○ Inhibitor of nuclear factor kappa B kinase beta subunit (M1-E19, human) peptide - Powder PE-01BDH90
○ IKKSelectide - IKKa (CHUK) protein kinase substrate peptide - Powder PE-01BHN95
 

Post-translation Modifications

For detailed information on phosphorylation of this kinase go to PhosphoNET
Acetylated:
T180, K659.
O-GlcNAcylated:
S733.
Serine phosphorylated:

S4, S6, S177+, S181+, S239, S246, S256, S257, S258, S267, S332, S335, S393, S402, S409, S411, S471, S474, S476, S489, S507, S550, S587, S600, S634, S670, S672, S675, S679, S682, S689, S692, S695, S697, S733-, S740-, S750-.
Threonine phosphorylated:

T23+, T180+, T324, T344, T368, T396, T399, T488, T559, T583, T610, T693, T735.
Tyrosine phosphorylated:

Y169, Y188-, Y199+, Y261, Y325, Y397, Y609.
Ubiquitinated:
K147, K163, K171, K418, K555, K703.
 

Distribution

Based on gene microarray analysis from the NCBI
Human Tissue Distribution
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
  • adipose
    100

    988

    42

    1157

  • adrenal
    5

    49

    20

    43

  • bladder
    9

    93

    3

    92

  • brain
    44

    433

    128

    992

  • breast
    94

    927

    34

    740

  • cervix
    7

    73

    119

    102

  • colon
    19

    184

    43

    418

  • heart
    86

    851

    52

    1422

  • intestine
    49

    486

    24

    384

  • kidney
    9

    87

    109

    209

  • liver
    9

    91

    36

    179

  • lung
    73

    720

    219

    651

  • lymphnode
    9

    93

    36

    83

  • ovary
    4

    41

    15

    36

  • pancreas
    20

    196

    26

    340

  • pituitary
    8

    77

    22

    71

  • prostate
    27

    271

    377

    355

  • salivarygland
    4

    43

    13

    47

  • skeletalmuscle"
    10

    94

    111

    94

  • skin
    61

    598

    162

    631

  • spinalcord
    18

    178

    24

    328

  • spleen
    37

    361

    29

    630

  • stomach
    6

    62

    6

    55

  • testis
    3

    33

    14

    31

  • thymus
    47

    463

    24

    793

  • thyroid
    85

    844

    70

    1241

  • tonsil
    7

    68

    39

    59

  • trachea
    5

    48

    14

    45

  • uterus
    5

    53

    14

    71

  • reticulocytes"
    5

    50

    42

    59

  • t-lymphocytes
    85

    843

    30

    783

  • b-lymphocytes
    67

    660

    51

    649

  • neutrophils
    13

    127

    83

    274

  • macrophages
    87

    857

    78

    717

  • sperm
    16

    160

    48

    212

 

Evolution

Species Conservation
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
  • tableheader
    100

    100

    100
  • tableheader
    97.5

    98.4

    98.5
  • tableheader
    99.7

    99.7

    99.7
  • tableheader
    -

    -

    94
  • tableheader
    -

    -

    -
  • tableheader
    95

    97.1

    95
  • tableheader
    -

    -

    -
  • tableheader
    91.8

    95.5

    93
  • tableheader
    91.3

    95.4

    92
  • tableheader
    -

    -

    -
  • tableheader
    88.5

    92.7

    -
  • tableheader
    49.3

    67.8

    69.5
  • tableheader
    50.4

    68.4

    73
  • tableheader
    51.6

    67.9

    62
  • tableheader
    -

    -

    -
  • tableheader
    25

    42.9

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
For a wider analysis go to PhosphoNET Evolution in PhosphoNET
 

Binding Proteins

Examples of known interacting proteins
hiddentext
No. Name – UniProt ID
1 NFKBIA - P25963
2 NFKB1 - P19838
3 TNFRSF1A - P19438
4 NFKBIB - Q15653
5 RELA - Q04206
6 PRKCQ - Q04759
7 IRS1 - P35568
8 CDC37 - Q16543
9 TNFAIP3 - P21580
10 RPS27A - P62988
11 TSC1 - Q92574
12 MAP3K11 - Q16584
13 PRKDC - P78527
14 PRKCB - P05771
15 TRPC4AP - Q8TEL6
 

Regulation

Activation:
Activated by phosphorylation at Ser-177, Ser-181, Tyr-188 and Tyr-199 in the kinase activation loop.
Inhibition:
Inhibited by phosphorylation at Ser-733, Ser-740, Ser-750
Synthesis:
NA
Degradation:
NA
 

Kinections Map

Click here to download a PPT of the image below
 
Kinections GIF
 

Known Upstream Kinases

For further details on these substrates click on the Substrate Short Name or UniProt ID. Phosphosite Location is hyperlinked to PhosphoNET predictions.
Based on in vitro and/or in vivo phosphorylation data

Kinase Short Name UniProt ID (Human) Phosphosite Location Phosphosite Sequence Effect of Phosphorylation
PKCa P17252 S177 AKELDQGSLCTSFVG +
PKCz Q05513 S177 AKELDQGSLCTSFVG +
TBK1 Q9UHD2 S177 AKELDQGSLCTSFVG +
MEKK1 Q13233 S177 AKELDQGSLCTSFVG +
NIK Q99558 S177 AKELDQGSLCTSFVG +
PKCa P17252 S181 DQGSLCTSFVGTLQY +
PKCz Q05513 S181 DQGSLCTSFVGTLQY +
SGK O00141 S181 DQGSLCTSFVGTLQY +
SRC P12931 Y188 SFVGTLQYLAPELLE -
SRC P12931 Y199 ELLEQQKYTVTVDYW +
PLK1 P53350 S733 TVREQDQSFTALDWS -
PLK1 P53350 S740 SFTALDWSWLQTEEE -
PLK1 P53350 S750 QTEEEEHSCLEQAS_ -
 

Known Downstream Substrates

For further details on these substrates click on the Substrate Short Name or UniProt ID. Phosphosite Location is hyperlinked to PhosphoNET predictions.
Based on in vitro and/or in vivo phosphorylation data

Substrate Short Name UniProt ID (Human) Phosphosite Location Phosphosite Sequence Effect of Phosphorylation
Bcl-10 O95999 S134 DGATNNLSRSNSDES
CARD11 Q9BXL7 S562 RSRSSIMSITAEPPG
COT (MAP3K8) P41279 S400 EDQPRCQSLDSALLE +
COT (MAP3K8) P41279 T290 FPKDLRGTEIYMSPE -
Dok1 p62 Q99704 S439 EPGTATGSGIKSHNS ?
Dok1 p62 Q99704 S443 ATGSGIKSHNSALYS ?
Dok1 p62 Q99704 S446 SGIKSHNSALYSQVQ ?
Dok1 p62 Q99704 S450 SHNSALYSQVQKSGA ?
Fos P01100 S308 ADWEPLHSGSLGMGP
FOXO3 (FKHRL1) O43524 S644 GLDFNFDSLISTQNV -
IkBa P25963 S32 LLDDRHDSGLDSMKD -
IkBa P25963 S36 RHDSGLDSMKDEEYE -
IKKg (IKBKG, NEMO) Q9Y6K9 S31 QDVLGEESPLGKPAM
IKKg (IKBKG, NEMO) Q9Y6K9 S376 PPAPAYLSSPLALPS
IKKg (IKBKG, NEMO) Q9Y6K9 S43 PAMLHLPSEQGAPET
IKKg (IKBKG, NEMO) Q9Y6K9 S68 LRDAIRQSNQILRER
IKKg (IKBKG, NEMO) Q9Y6K9 S85 ELLHFQASQREEKEF
IRF3 Q14653 S396 NTVDLHISNSHPLSL +
IRF3 Q14653 S398 VDLHISNSHPLSLTS +
IRF3 Q14653 S402 ISNSHPLSLTSDQYK +
IRF3 Q14653 S405 SHPLSLTSDQYKAYL +
IRF3 Q14653 T404 NSHPLSLTSDQYKAY +
IRS1 P35568 S312 TESITATSPASMVGG -
NFkB-p105 (NFKB1) P19838 S923 DELRDSDSVCDSGVE -
NFkB-p105 (NFKB1) P19838 S927 DSDSVCDSGVETSFR -
NFkB-p105 (NFKB1) P19838 S932 CDSGVETSFRKLSFT -
NFkB-p65 (RELA) Q04206 S468 AVFTDLASVDNSEFQ
NFkB-p65 (RELA) Q04206 S536 SGDEDFSSIADMDFS
REL Q04864 S557 SNTTVFVSQSDAFEG
SNAP23 O00161 S95 NRTKNFESGKAYKTT
 

Protein Kinase Specificity

Matrix of observed frequency (%) of amino acids in aligned protein substrate phosphosites

Kinections GIF
Matrix Type:
Experimentally derived from alignment of 61 known protein substrate phosphosites.
Domain #:
1
 

Inhibitors

For further details on these inhibitors click on the Compound Name and enter it into DrugKiNET or click on the ID's
Based on in vitro and/or in vivo phosphorylation data
Compound Name KD, Ki or IC50 (nM) PubChem ID ChEMBL ID PubMed ID
Lestaurtinib Kd = 12 nM 126565 22037378
IKK-2 Inhibitor IV IC50 = 18 nM 9903786 257167 18088098
Staurosporine Kd = 31 nM 5279 22037378
7-hydroxystaurosporine IC50 > 60 nM 72271 1236539
TTT-3002 IC50 < 60 nM
R406 Kd = 71 nM 11984591 22037378
AT9283 IC50 > 100 nM 24905142 19143567
CHEMBL1650545 IC50 > 100 nM 53316611 1650545 21128646
IKK-2 Inhibitor VIII IC50 < 100 nM 66576999 368427
K00596a IC50 < 100 nM 9549298 200027
Staurosporine aglycone IC50 = 100 nM 3035817 281948
Wyeth PDK1 Inhibitor Compound 1 IC50 = 100 nM
AST-487 Kd = 110 nM 11409972 574738 22037378
BMS-345541 Kd = 130 nM 9813758 249697 22037378
K-252a; Nocardiopsis sp. IC50 > 250 nM 3813 281948 22037377
BCP9000906 IC50 = 300 nM 5494425 21156 11934592
Kinome_2915 Ki = 340 nM 11293798 373598 17352464
TG101348 Kd = 360 nM 16722836 1287853 22037378
Kinome_2917 Ki = 380 nM 11362471 223367 17352464
KW2449 Kd = 430 nM 11427553 1908397 22037378
Cdk1/2 Inhibitor III IC50 = 500 nM 5330812 261720 22037377
IPA-3 IC50 < 500 nM 521106 472940
BAY65-1942 IC50 < 600 nM 44572415 516203
Gö6976 IC50 > 600 nM 3501 302449
SureCN5302803 IC50 = 650 nM 24788740 17502144
Momelotinib IC50 < 750 nM 25062766 19295546
A 443654 IC50 > 900 nM 10172943 379300
BX517 IC50 > 900 nM 11161844 228654
1;9-Pyrazoloanthrone IC50 = 1 µM 8515 7064
Amgen TBK 1 inhibitor (Compound II) IC50 = 1 µM
Baricitinib IC50 > 1 µM 44205240 20363976
CHEMBL606245 IC50 = 1 µM 44160269 606245 19884013
CP673451 IC50 > 1 µM 10158940 15705896
JAK3 Inhibitor VI IC50 > 1 µM 16760524 22037377
MK5108 IC50 > 1 µM 24748204 20053775
Novartis 12a (PKD1) IC50 = 1 µM
PF-228 IC50 = 1 µM 11612883 17395594
PS-1145 IC50 < 1 µM 9949093 79004
SGI-1776 IC50 > 1 µM 19734450
Silmitasertib IC50 > 1 µM 24748573 21174434
SNS314 IC50 > 1 µM 16047143 514582 18678489
Syk Inhibitor IV IC50 = 1 µM 10200390
WZ3146 Kd > 1 µM 44607360 20033049
WZ4002 Kd > 1 µM 44607530 20033049
Ruxolitinib Kd = 2.3 µM 25126798 1789941 22037378
CHEMBL248757 Ki > 2.338 µM 44444843 248757 17935989
JNJ-28871063 IC50 < 3 µM 17747413 17975007
JNKIN7 IC50 > 3 µM 57340685
KT5720 IC50 > 3 µM 3844 608532
JNK Inhibitor VIII Ki > 3.2 µM 11624601 210618 16759099
Kinome_3024 Ki > 3.2 µM 11539329 210963 16759099
Kinome_3027 Ki > 3.2 µM 11640926 378627 16759099
Kinome_3028 Ki > 3.2 µM 11590363 210928 16759099
SureCN4875304 IC50 > 3.5 µM 46871765 20472445
Chelerythrine IC50 < 4 µM 72311
JNJ-28871063 IC50 > 4 µM 17747413 17975007
Quercetagetin IC50 < 4 µM 5281680 413552
Doramapimod IC50 > 4.5 µM 156422 103667
Harmalol IC50 > 4.5 µM 5353656 311932
Harmane IC50 > 4.5 µM 5281404 12014
JNKIN8 IC50 > 4.5 µM 57340686
Kenpaullone IC50 > 4.5 µM 3820 296586
Sunitinib IC50 > 4.5 µM 5329102 535
 

Disease Linkage

General Disease Association:

Endocrine disorders
Specific Diseases (Non-cancerous):

Insulin resistance; Immunodeficiency 15
Comments:
Insulin resistance is a disease characterized by a failure of cells to respond to normal levels of circulating insulin, resulting in hyperglycemia due to impaired glucose uptake. This causes an overproduction of insulin by the beta cells in the pancreas, which leads to hyperinsulinemia, and can contribute to the development of Type 2 diabetes or latent autoimmune diabetes in adults. immunodeficiency-15 (IMD15) is a immune disease characterized by the development in infants of severe bacterial, fungal, and viral infections, resulting in a failure to thrive. This disease is inherited in an autosomal recessive manner and results from defects in the differentiation and subsequent activation of immune cells (e.g. T and B cells). Mutations in the IKKb gene have been observed in patients with the IMD15 phenotype, including a 1-bp duplication mutation (c.1292dupG) in exon 13 of the gene resulting in a frameshift and premature truncation of the protein and loss of the alpha-helical dimerization domain, as well as a transition mutation resulting in an R272X mutation producing a truncated, non-functional protein correlated with the absence of memory B-cells and very low numbers of memory T-cells. In animal studies, mice lacking a functional IKKb protein specifically in myeloid cells displayed higher mortality when exposed to endotoxin, indicating a compromised immune system. In addition, the prolonged pharmacological inhibition of IKKb resulted in an increase in lipopolysaccharide-induced mortality in mice. Furthermore, inflammation has been proposed as a central component of several metabolic disorders, such as insulin resistance and type 2 diabetes. IKKb is a key coordinator of inflammatory responses through its role in the activation of NF-KB, indicating a potential mechanistic link. Interestingly, mice that lack IKKb expression in myeloid cells display the maintenance of insulin sensitivity and failure to develop insulin resistance even in response to a high fat diet, aging, or obesity.
 
Comments:
IKKb may be a tumour requiring protein (TRP), since it displays extremely low rates of mutation in human cancers.
 
Gene Expression in Cancers:

TranscriptoNET (www.transcriptonet.ca) analysis with mRNA expression data retrieved from the National Center for Biotechnology Information's Gene Expression Omnibus (GEO) database, which was normalized against 60 abundantly and commonly found proteins, indicated altered expression for this protein kinase as shown here as the percent change from normal tissue controls (%CFC) as supported with the Student T-test in the following types of human cancers: Bladder carcinomas (%CFC= +105, p<0.009); Brain glioblastomas (%CFC= -84, p<0.049); Brain oligodendrogliomas (%CFC= -87, p<0.044); Breast epithelial hyperplastic enlarged lobular units (HELU) (%CFC= +90, p<0.088); Cervical cancer stage 1B (%CFC= +83, p<0.061); and Cervical cancer stage 2B (%CFC= +115, p<0.051). The COSMIC website notes an up-regulated expression score for IKKb in diverse human cancers of 666, which is 1.4-fold of the average score of 462 for the human protein kinases. The down-regulated expression score of 171 for this protein kinase in human cancers was 2.9-fold of the average score of 60 for the human protein kinases.
Mutagenesis Experiments:

Insertional mutagenesis studies in mice have not yet revealed a role for this protein kinase in mouse cancer oncogenesis.
Mutation Rate in All Cancers:

Percent mutation rates per 100 amino acids length in human cancers: 0.01 % in 25958 diverse cancer specimens. This rate is -90 % lower than the average rate of 0.075 % calculated for human protein kinases in general. Such a very low frequency of mutation in human cancers is consistent with this protein kinase playing a role as a tumour requiring protein (TRP).
Mutation Rate in Specific Cancers:

Highest percent mutation rates per 100 amino acids length in human cancers: 0.05 % in 2314 haematopoietic and lymphoid cancers tested; 0.01 % in 1683 breast cancers tested.
Frequency of Mutated Sites:

Most frequent mutations with the number of reports indicated in brackets: K171E (8); K171T )2).
Comments:
Only 5 deletions, no insertions or complex mutations are noted on the COSMIC website.
 
COSMIC Entry:
IKBKB_ENST00000520810
OMIM Entry:
603258
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