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Updated November 2019

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Nomenclature

Short Name:
AMPKa1
Full Name:
5'-AMP-activated protein kinase, catalytic alpha-1 chain
Alias:
  • 5'-AMP-activated protein kinase, catalytic alpha-1 chain
  • AMPK-alpha1
  • HMG-CoA reductase kinase
  • HMG-CoA reductase kinase
  • PRKAA1
  • Protein kinase, AMP-activated, alpha 1 catalytic subunit
  • AAPK1
  • Acetyl-CoA carboxylase kinase
  • AMPK alpha-1 chain
  • AMPK, alpha, 1

Classification

Type:
Protein-serine/threonine kinase
Group:
CAMK
Family:
CAMKL
SubFamily:
AMPK
 
 

Specific Links

Entrez-Gene Entry: 5562
Entrez-Protein Entry: NP_996790
GeneCards Entry: AMPKA1
KinBASE Entry: AMPKA1
OMIM Entry: 602739
Pfam Entry: Q13131
PhosphoNET Entry: Q13131
Phosphosite Plus Entry: 742
Protein Data Bank Entry: 2V8Q
ScanSite Entry: Q13131
Source Entry: PRKAA1
UCSD-Nature Entry: A000267
UniProt Entry: Q13131
Kinexus Products: AMPKa1
5'-AMP-activated protein kinase catalytic subunit alpha-1 pan-specific antibody AB-NK259-1
5'-AMP-activated protein kinase catalytic subunit alpha-1 pan-specific antibody AB-NK259-2

General Links

ClustalW2
GPS-Cuckoo
Human Protein Atlas
Kinase.com
Kinase Research
Kinasource
Kinomer
Netphorest
NetworKIN
Phosida
PhosphoElm
Protein Blast
ScanSite
String

Structure

Mol. Mass (Da):
64009
# Amino Acids:
559
# mRNA Isoforms:
2
mRNA Isoforms:
65,523 Da (574 AA; Q13131-2); 64,009 Da (559 AA; Q13131)
4D Structure:
Heterotrimer of an alpha catalytic subunit, a beta and a gamma non-catalytic subunits. Interacts with FNIP1 and FNIP2.
1D Structure:
Retrieve Gene Sequence
Retrieve Full Protein Sequence
Retrieve Catalytic Domain Sequence
 
3D Image (rendered using PV Viewer):

PDB ID
4REW

Subfamily Alignment
subfamily domain
 
Domain Distribution:
Start End Domain
27 279 Pkinase
 

Kinexus Products

Click on entries below for direct links to relevant products from Kinexus for this protein kinase.
hiddentext
○ 5'-AMP-activated protein kinase catalytic subunit alpha-1 pan-specific antibody AB-NK259-1
○ 5'-AMP-activated protein kinase catalytic subunit alpha-1 pan-specific antibody AB-NK259-2
 

Post-translation Modifications

For detailed information on phosphorylation of this kinase go to PhosphoNET
Acetylated:
K80.
Serine phosphorylated:

S6+, S172, S176, S184+, S187-, S293, S356, S360, S397, S467, S486, S487, S494, S496, S498, S506, S508, S520, S523, S524, S527, S531.
Threonine phosphorylated:

T32, T183+, T269+, T355, T368-, T382, T388, T482, T488, T490, T522, T526.
Tyrosine phosphorylated:

Y190, Y247, Y294, Y441, Y442, Y463, Y500.
Ubiquitinated:
K285, K396, K485.
 

Distribution

Based on gene microarray analysis from the NCBI
Human Tissue Distribution
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
% Max Expression:

Mean Expression:

Number of Samples:

Standard Deviation:
  • adipose
    33

    1378

    47

    1176

  • adrenal
    0.5

    20

    21

    17

  • bladder
    4

    176

    10

    130

  • brain
    6

    232

    163

    707

  • breast
    17

    696

    55

    539

  • cervix
    0.8

    33

    105

    55

  • colon
    3

    117

    64

    259

  • heart
    16

    672

    45

    1412

  • intestine
    9

    364

    20

    348

  • kidney
    2

    90

    135

    93

  • liver
    3

    117

    34

    138

  • lung
    13

    538

    196

    521

  • lymphnode
    2

    95

    32

    166

  • ovary
    0.5

    20

    15

    13

  • pancreas
    1

    41

    21

    47

  • pituitary
    0.7

    31

    30

    28

  • prostate
    3

    106

    254

    116

  • salivarygland
    2

    92

    20

    118

  • skeletalmuscle"
    1.2

    52

    124

    48

  • skin
    14

    589

    191

    521

  • spinalcord
    2

    94

    27

    107

  • spleen
    2

    105

    31

    113

  • stomach
    3

    136

    20

    169

  • testis
    6

    262

    22

    218

  • thymus
    2

    95

    28

    106

  • thyroid
    20

    857

    106

    913

  • tonsil
    2

    65

    38

    108

  • trachea
    3

    126

    22

    147

  • uterus
    3

    109

    21

    139

  • reticulocytes"
    3

    123

    56

    186

  • t-lymphocytes
    20

    823

    24

    740

  • b-lymphocytes
    100

    4218

    51

    10863

  • neutrophils
    4

    179

    139

    580

  • macrophages
    19

    815

    135

    724

  • sperm
    14

    598

    74

    1289

 

Evolution

Species Conservation
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
PhosphoNET % Identity:
PhosphoNET % Similarity:
Homologene %
Identity:
  • tableheader
    100

    100

    100
  • tableheader
    0

    0

    100
  • tableheader
    97.2

    97.4

    99.5
  • tableheader
    -

    -

    99
  • tableheader
    -

    -

    98
  • tableheader
    92.5

    93.8

    99
  • tableheader
    -

    -

    -
  • tableheader
    98.8

    99.5

    99
  • tableheader
    99.1

    99.6

    99
  • tableheader
    -

    -

    -
  • tableheader
    89.2

    89.2

    -
  • tableheader
    27.1

    43

    95.5
  • tableheader
    88.7

    94.6

    90
  • tableheader
    84.4

    90.9

    88
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    53.5

    62.2

    -
  • tableheader
    -

    53.5

    58
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    -
  • tableheader
    -

    -

    52
  • tableheader
    45.1

    62.4

    57
  • tableheader
    33.5

    52

    -
  • tableheader
    -

    -

    -
For a wider analysis go to PhosphoNET Evolution in PhosphoNET
 

Binding Proteins

Examples of known interacting proteins
hiddentext
No. Name – UniProt ID
1 PRKAB1 - Q9Y478
2 TSC2 - P49815
3 PRKAG1 - P54619
4 PRKAB2 - O43741
5 PRKAG3 - Q9UGI9
6 CFTR - P13569
7 CAB39 - Q9Y376
8 RAF1 - P04049
9 EEF2K - O00418
10 RAPGEF6 - Q8TEU7
11 NUAK1 - O60285
12 CDC37 - Q16543
13 HSPA5 - P11021
14 PRKAG2 - Q9UGJ0
 

Regulation

Activation:
Binding of AMP results in allosteric activation, inducing phosphorylation on Thr-183 by STK11 in complex with STE20-related adapter-alpha (STRAD alpha) pseudo kinase and CAB39. Phosphorylation at Thr-174 by CAMKK1 and CAMKK2 increases phosphotransferase activity, triggered by a rise in intracellular calcium ions, without detectable changes in the AMP/ATP ratio.
Inhibition:
NA
Synthesis:
NA
Degradation:
NA
 

Kinections Map

Click here to download a PPT of the image below
 
Kinections GIF
 

Known Upstream Kinases

For further details on these substrates click on the Substrate Short Name or UniProt ID. Phosphosite Location is hyperlinked to PhosphoNET predictions.
Based on in vitro and/or in vivo phosphorylation data

Kinase Short Name UniProt ID (Human) Phosphosite Location Phosphosite Sequence Effect of Phosphorylation
BRSK2 Q8IWQ3 T183 SDGEFLRTSCGSPNY +
BRSK1 Q8TDC3 T183 SDGEFLRTSCGSPNY +
AMPKa1 Q13131 T183 SDGEFLRTSCGSPNY +
LKB1 Q15831 T183 SDGEFLRTSCGSPNY +
CaMK2b Q13554 T183 SDGEFLRTSCGSPNY +
CaMKK2 Q96RR4 T183 SDGEFLRTSCGSPNY +
CaMKK1 Q8N5S9 T183 SDGEFLRTSCGSPNY +
AMPKa1 Q13131 T269 VDPMKRATIKDIREH +
LKB1 Q15831 T269 VDPMKRATIKDIREH +
ULK1 O75385 T368 FLDDHHLTRPHPERV -
PKACa P17612 S487 ATPQRSGSVSNYRSC
LKB1 Q15831 S496 ATPQRSGSVSNYRSC
 

Known Downstream Substrates

For further details on these substrates click on the Substrate Short Name or UniProt ID. Phosphosite Location is hyperlinked to PhosphoNET predictions.
Based on in vitro and/or in vivo phosphorylation data

Substrate Short Name UniProt ID (Human) Phosphosite Location Phosphosite Sequence Effect of Phosphorylation
ACACA Q13085 S80 LHIRSSMSGLHLVKQ -
ACACB O00763 S221 PTMRPSMSGLHLVKR -
AMPKa1 (PRKAA1) Q13131 S360 LATSPPDSFLDDHHL
AMPKa1 (PRKAA1) Q13131 S496 ATPQRSGSVSNYRSC
AMPKa1 (PRKAA1) Q13131 T183 SDGEFLRTSCGSPNY +
AMPKa1 (PRKAA1) Q13131 T269 VDPMKRATIKDIREH +
AMPKb1 Q9Y478 S101 SGSFNNWSKLPLTRS
AMPKb1 Q9Y478 S108 SKLPLTRSHNNFVAI +
AMPKb1 Q9Y478 S24 HKTPRRDSSGGTKDG
AMPKb1 Q9Y478 S25 KTPRRDSSGGTKDGD
AMPKb1 Q9Y478 S96 KEVYLSGSFNNWSKL
ChREBP Q9NP71 S556 TLLRSPGSPQETVPE
CK1e1 (CSNK1E) P49674 S389 RGAPANVSSSDLTGR -
eEF2K O00418 S366 SPRVRTLSGSRPPLL -
eEF2K O00418 S398 DSLPSSPSSATPHSQ +
eEF2K O00418 S78 SSGSPANSFHFKEAW -
eNOS P29474 S1177 TSRIRTQSFSLQERQ +
eNOS P29474 T495 TGITRKKTFKEVANA
EP300 Q09472 S89 SELLRSGSSPNLNMG -
FRAP1 (mTOR) P42345 T2446 NKRSRTRTDSYSAGQ -
GABBR2 O75899 S784 VTSVNQASTSRLEGL
GYS1 P13807 S8 MPLNRTLSMSSLPGL -
GYS2 P54840 S8 MLRGRSLSVTSLGGL -
Histone H2B P33778 S37 RKRSRKESYSIYVYK +
HMG-CoA reductase P04035 S872 SHMIHNRSKINLQDL
HNF4A P41235 S313 GKIKRLRSQVQVSLE
HSL Q05469 S554 EPMRRSVSEAALAQP
IRS1 P35568 S794 QHLRLSTSSGRLLYA -
KPNA2 P52292 S105 QAARKLLSREKQPPI
NM23 (NME1) P15531 S122 NIIHGSDSVESAEKE
NM23 (NME1) P15531 S144 EELVDYTSCAQNWIY
nNOS P29475 S1417 TNRLRSESIAFIEES
p27Kip1 P46527 T198 PGLRRRQT_______ -
PFKFB2 O60825 S466 PVRMRRNSFTPLSSS
PFKFB3 Q16875 S461 NPLMRRNSVTPLASP
Raptor Q8N122 S792 DKMRRASSYSSLNSL
TSC2 P49815 S1387 QPLSKSSSSPELQTL
TSC2 P49815 T1271 PPLPRSNTVASFSSL
ULK1 O75385 S556 GLGCRLHSAPNLSDL +
 

Protein Kinase Specificity

Matrix of observed frequency (%) of amino acids in aligned protein substrate phosphosites

Kinections GIF
Matrix Type:
Experimentally derived from alignment of 104 known protein substrate phosphosites.
Domain #:
1
 

Inhibitors

For further details on these inhibitors click on the Compound Name and enter it into DrugKiNET or click on the ID's
Based on in vitro and/or in vivo phosphorylation data
Compound Name KD, Ki or IC50 (nM) PubChem ID ChEMBL ID PubMed ID
7-hydroxystaurosporine IC50 < 2 nM 72271 1236539
TTT-3002 IC50 < 2 nM
Staurosporine Kd = 3.7 nM 5279 18183025
BX517 IC50 < 6 nM 11161844 228654
BX795 IC50 = 10 nM 10077147 577784
Hesperadin Kd = 19 nM 10142586 514409 19035792
Sunitinib Kd = 19 nM 5329102 535 18183025
Lestaurtinib Kd = 25 nM 126565 22037378
NVP-TAE684 Kd = 27 nM 16038120 509032 22037378
Gö6976 IC50 < 40 nM 3501 302449
Staurosporine aglycone IC50 < 40 nM 3035817 281948
SureCN3470757 IC50 < 40 nM 11588244 375236
Amgen TBK 1 inhibitor (Compound II) IC50 < 60 nM
Ro-31-8220 IC50 < 60 nM 5083 6291
GSK-3 Inhibitor IX IC50 < 80 nM 5287844 409450
Nintedanib Kd = 87 nM 9809715 502835 22037378
AT9283 IC50 > 100 nM 24905142 19143567
GSK650394A IC50 = 100 nM 25022668 558642
IKK-3 inhibitor IX IC50 < 100 nM 11626927 373751
SU14813 Kd = 100 nM 10138259 1721885 18183025
SU6656 IC50 < 100 nM 5353978 605003
Sunitinib IC50 = 100 nM 5329102 535
Syk Inhibitor IC50 = 100 nM 6419747 104279
Wyeth PDK1 Inhibitor Compound 1 IC50 = 100 nM
N-Benzoylstaurosporine Kd = 180 nM 56603681 608533 18183025
Aurora A Inhibitor 23 (DF) Kd < 200 nM 21992004
A 443654 IC50 > 300 nM 10172943 379300
R406 Kd = 300 nM 11984591 22037378
PHA-665752 Kd = 310 nM 10461815 450786 22037378
Aurora A Inhibitor 1 (DF) Kd < 400 nM 21992004
Gö7874 IC50 < 400 nM 5327863
KT5720 IC50 < 400 nM 3844 608532
KW2449 Kd = 430 nM 11427553 1908397 22037378
Dovitinib Kd = 520 nM 57336746 18183025
BML-275 IC50 < 600 nM 11524144 478629
H-1152; Glycyl IC50 < 600 nM 16760635
H-89 IC50 < 600 nM 449241 104264
MRT67307 IC50 < 600 nM 44464263
PF-3644022 IC50 < 600 nM
PP242 IC50 < 600 nM 25243800
Foretinib Kd = 730 nM 42642645 1230609 22037378
Momelotinib IC50 < 750 nM 25062766 19295546
PF-3644022 IC50 < 800 nM
1;9-Pyrazoloanthrone IC50 = 1 µM 8515 7064
Aurora A Inhibitor 29 (DF) Kd = 1 µM 21992004
BI-D1870 IC50 = 1 µM 25023738 573107
Bisindolylmaleimide I IC50 < 1 µM 2396 7463
BX320 IC50 = 1 µM 657138 573108
IPA-3 IC50 = 1 µM 521106 472940
K00596a IC50 = 1 µM 9549298 200027
LDN193189 IC50 = 1 µM 25195294 513147
Orantinib IC50 = 1 µM 5329099 274654
Princeton's TrkA inhibitor compound 20h IC50 = 1 µM
R406 IC50 = 1 µM 11984591
Ruboxistaurin IC50 = 1 µM 153999 91829
Silmitasertib IC50 > 1 µM 24748573 21174434
SNS314 IC50 > 1 µM 16047143 514582 18678489
STO609 IC50 = 1 µM 51371511
SureCN10063060 Ki > 1 µM 52936621 21391610
WZ3146 Kd > 1 µM 44607360 20033049
WZ4002 Kd > 1 µM 44607530 20033049
Tozasertib Kd = 1.1 µM 5494449 572878 18183025
AST-487 Kd = 1.4 µM 11409972 574738 18183025
CHEMBL248757 Ki = 1.539 µM 44444843 248757 17935989
JNJ-7706621 Kd = 1.7 µM 5330790 191003 18183025
Quercetagetin IC50 < 2 µM 5281680 413552
SB415286 IC50 = 2 µM 4210951 322970
Crizotinib Kd = 2.4 µM 11626560 601719 22037378
TG101348 Kd = 2.4 µM 16722836 1287853 22037378
SB202190 IC50 < 3 µM 5353940 278041
Vandetanib Kd = 3 µM 3081361 24828 22037378
SureCN4875304 IC50 > 3.5 µM 46871765 20472445
Bosutinib Kd = 3.9 µM 5328940 288441 22037378
CKI-7 IC50 < 4 µM 129236 489157
H-8 IC50 < 4 µM 3540 148333
JNJ-28871063 IC50 > 4 µM 17747413 17975007
Novartis 12a (PKD1) IC50 < 4 µM
SB203580 IC50 < 4 µM 176155 10
Y-27632 IC50 < 4 µM 448042 36228
Alsterpaullone IC50 > 4.5 µM 5005498 50894
Doramapimod IC50 > 4.5 µM 156422 103667
GSK429286 IC50 > 4.5 µM 11373846 375312
GSK461364A IC50 > 4.5 µM 15983966 1908394
JNKIN8 IC50 > 4.5 µM 57340686
Purvalanol B IC50 > 4.5 µM 448991 23254
RAF265 Kd = 4.5 µM 11656518 558752 18183025
 

Disease Linkage

General Disease Association:

Cardiovascular disorders
Specific Diseases (Non-cancerous):

Wolff-Parkinson-White (WPW) syndrome
Comments:
Wolff-Parkinson-White syndrome (WPW), also known as anomalous atrioventricular excitation, is a cardiovascular disease characterized by an abnormal heartbeat (arrhythmia) resulting from the uncoordinated conduction of electrical signals through the myocardium. This disease is one of the most common causes of rapid heart rate (tachycardia) in infants and children. Although the cause in most cases is unknown, autosomal dominant mutations in AMPKa1 have been implicated in the disorder. AMPKa1 is the catalytic subunit of AMP-activated protein kinase (AMPK), a protein kinase that functions as a cellular energy sensor and plays a key role in the regulation of cellular metabolism. When cellular ATP levels drop (e.g. during starvation situations), AMPK simultaneously promotes energy producing mechanisms and inhibits energy-consuming pathways, such as metabolite biosynthesis and cellular proliferation/growth. In general, several mutations in AMPK have been associated with abnormal cardiac function in humans, specifically ventricular hypertrophy and electrophysiological abnormalities, which are also characteristic of WPW syndrome. None of the observed mutations were correlated with changes in the phosphorylation state of the T172 residue of AMPK, but resulted in either a reduced AMP-dependence of protein activity or reduced AMP sensitivity. Transgenic mice overexpressing a mutant AMPK?2 subunit (N488I substitution mutation) displayed increased catalytic activity of AMPK, a 30-fold increase in accumulation of cardiac glycogen, left ventricular hypertrophy, and ventricular pre-excitation and dysfunction of the sino-atiral node. In addition, electrophysiological recordings revealed alternative pathways for electrical conduction through the atrial and ventricular musculature, consistent with the phenotype of WPW syndrome. Histological analysis of the tissue demonstrated that glycogen-filled cardiomyocytes disrupted the annulus fibrosis, which is an insulating layer that prevents the inappropriate electrical stimulation of the ventricles by atrial electrical activity. The loss of tissue integrity in the annulus fibrosis is thought to be the anatomical substrate mediating the pre-excitation of the ventricles, thus potentially explaining the symptoms of WPW syndrome. Therefore, aberrant activity of AMPK may play a important role in the development of WPW syndrome.
 
Gene Expression in Cancers:

TranscriptoNET (www.transcriptonet.ca) analysis with mRNA expression data retrieved from the National Center for Biotechnology Information's Gene Expression Omnibus (GEO) database, which was normalized against 60 abundantly and commonly found proteins, indicated altered expression for this protein kinase as shown here as the percent change from normal tissue controls (%CFC) as supported with the Student T-test in the following types of human cancers: Brain glioblastomas (%CFC= -61, p<0.052); Brain oligodendrogliomas (%CFC= -74, p<0.023); Clear cell renal cell carcinomas (cRCC) stage I (%CFC= +525, p<0.0001); Oral squamous cell carcinomas (OSCC) (%CFC= +45, p<0.033); and Prostate cancer - primary (%CFC= +50, p<0.0002). The COSMIC website notes an up-regulated expression score for AMPKa1 in diverse human cancers of 712, which is 1.5-fold of the average score of 462 for the human protein kinases. The down-regulated expression score of 95 for this protein kinase in human cancers was 1.6-fold of the average score of 60 for the human protein kinases.
Mutagenesis Experiments:

Insertional mutagenesis studies in mice have not yet revealed a role for this protein kinase in mouse cancer oncogenesis.
Mutation Rate in All Cancers:

Percent mutation rates per 100 amino acids length in human cancers: 0.04 % in 25389 diverse cancer specimens. This rate is -44 % lower than the average rate of 0.075 % calculated for human protein kinases in general.
Mutation Rate in Specific Cancers:

Highest percent mutation rates per 100 amino acids length in human cancers: 0.19 % in 1119 large intestine cancers tested.
Frequency of Mutated Sites:

None > 3 in 20,655 cancer specimens
Comments:
No deletions, insertions or complex mutations are noted on the COSMIC website.
 
COSMIC Entry:
PRKAA1
OMIM Entry:
602739
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